Research workbench
AlphaFold monomer V2.0 prediction for pertussis toxin subunit 3 (P04979)
Analyse AlphaFold monomer V2.0 prediction for pertussis toxin subunit 3 (P04979) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P04979
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0B240F978546CA1A04E3ff43f85651dF169A524D
- Molecule
- Pertussis toxin subunit 3
- UniProt
- P04979
- Pockets
- 1 · best druggability 0.32
Structure
1 distinct chain · 27% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pertussis toxin subunit 3 | protein | 227 | 27% helix, 34% strand | P04979 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.32 | 0.76 | 19 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1PRT · The crystal structure of pertussis toxin · an experimental structure of the same protein · chain A against C, TM-score 0.86
- 1PRT · The crystal structure of pertussis toxin · an experimental structure of the same protein · chain A against C, TM-score 0.86
- 1BCP · Binary complex of pertussis toxin and ATP · an experimental structure of the same protein · chain A against C, TM-score 0.86
- 1BCP · Binary complex of pertussis toxin and ATP · an experimental structure of the same protein · chain A against C, TM-score 0.86
- 1PTO · The structure of a pertussis toxin-sugar complex as a model for receptor binding · an experimental structure of the same protein · chain A against C, TM-score 0.86
- 1PTO · The structure of a pertussis toxin-sugar complex as a model for receptor binding · an experimental structure of the same protein · chain A against C, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04979
- Elsewhere: UniProt P04979 · AlphaFold DB P04979
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