Research workbench
AlphaFold monomer V2.0 prediction for transketolase (P99161)
Analyse AlphaFold monomer V2.0 prediction for transketolase (P99161) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P99161
- Type
- protein
- Length
- 662 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xc59A47c8d9b1543054659D2a0C21B0fdf18F05A4
- Molecule
- Transketolase
- UniProt
- P99161
- Pockets
- 6 · best druggability 0.58
Structure
1 distinct chain · 46% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transketolase | protein | 662 | 46% helix, 14% strand | P99161 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 294 | 0.58 | 0.78 | 40 | empty |
| 2 | 101 | 0.41 | 0.77 | 15 | empty |
| 3 | 57 | 0.37 | 0.79 | 16 | empty |
| 4 | 77 | 0.31 | 0.74 | 18 | empty |
| 5 | 52 | 0.28 | 0.75 | 16 | empty |
Compared structures
- 8R3S · Transketolase from Staphylococcus aureus in complex with thiamin pyrophosphate · an experimental structure of the same protein · chain A against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P99161
- Elsewhere: UniProt P99161 · AlphaFold DB P99161
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