Research workbench
AlphaFold monomer V2.0 prediction for trigger factor (Q9RT21)
Analyse AlphaFold monomer V2.0 prediction for trigger factor (Q9RT21) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9RT21
- Type
- protein
- Length
- 465 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9B130d619fCFc21d0D08E5Ce38Cf42A5fbe230CB
- Molecule
- Trigger factor
- UniProt
- Q9RT21
- Pockets
- 3 · best druggability 0.47
Structure
1 distinct chain · 47% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trigger factor | protein | 465 | 47% helix, 17% strand | Q9RT21 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 170 | 0.47 | 0.76 | 15 | empty |
| 2 | 60 | 0.29 | 0.73 | 15 | empty |
| 3 | 50 | 0.25 | 0.73 | 12 | empty |
Compared structures
- 2AAR · Structure of trigger factor binding domain in biologically homologous complex with… · an experimental structure of the same protein · chain A against 7, TM-score 0.22
- 2AAR · Structure of trigger factor binding domain in biologically homologous complex with… · an experimental structure of the same protein · chain A against 7, TM-score 0.22
- 2D3O · Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit… · an experimental structure of the same protein · chain A against 1, TM-score 0.17
- 2D3O · Structure of ribosome binding domain of the trigger factor on the 50S ribosomal subunit… · an experimental structure of the same protein · chain A against 1, TM-score 0.17
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RT21
- Elsewhere: UniProt Q9RT21 · AlphaFold DB Q9RT21
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