Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (Q2JY68)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (Q2JY68) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q2JY68
- Type
- protein
- Length
- 455 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9F605311B7e26e76340423EfAfbE5e2EFc7A0b7C
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- Q2JY68
- Pockets
- 3 · best druggability 0.73
Structure
1 distinct chain · 52% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 455 | 52% helix, 9% strand | Q2JY68 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 421 | 0.73 | 0.83 | 46 | empty |
| 2 | 211 | 0.48 | 0.75 | 28 | empty |
| 3 | 185 | 0.44 | 0.74 | 34 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2JY68
- Elsewhere: UniProt Q2JY68 · AlphaFold DB Q2JY68
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