Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (Q3YUZ0)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (Q3YUZ0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3YUZ0
- Type
- protein
- Length
- 631 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbDA05C32aD6eE153C8C5A78dfa48d7Ba25694fea
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- Q3YUZ0
- Pockets
- 7 · best druggability 0.75
Structure
1 distinct chain · 45% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 631 | 45% helix, 11% strand | Q3YUZ0 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 339 | 0.75 | 0.86 | 55 | empty |
| 2 | 532 | 0.73 | 0.82 | 54 | empty |
| 3 | 142 | 0.45 | 0.76 | 24 | empty |
| 4 | 103 | 0.41 | 0.77 | 19 | empty |
| 5 | 88 | 0.31 | 0.73 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3YUZ0
- Elsewhere: UniProt Q3YUZ0 · AlphaFold DB Q3YUZ0
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