Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (Q3KJ20)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (Q3KJ20) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3KJ20
- Type
- protein
- Length
- 629 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5e58272ea25a05e06901A2eAe9f63939b344e0c6
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- Q3KJ20
- Pockets
- 8 · best druggability 0.79
Structure
1 distinct chain · 44% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 629 | 44% helix, 11% strand | Q3KJ20 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 212 | 0.79 | 0.93 | 39 | empty |
| 2 | 408 | 0.73 | 0.83 | 51 | empty |
| 3 | 152 | 0.63 | 0.85 | 30 | empty |
| 4 | 116 | 0.40 | 0.75 | 19 | empty |
| 5 | 121 | 0.37 | 0.73 | 25 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3KJ20
- Elsewhere: UniProt Q3KJ20 · AlphaFold DB Q3KJ20
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