Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (Q3J7C1)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (Q3J7C1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3J7C1
- Type
- protein
- Length
- 624 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xc0F878C3f3E2a1874e2A6daC80d429e553DdB0D5
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- Q3J7C1
- Pockets
- 8 · best druggability 0.73
Structure
1 distinct chain · 45% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 624 | 45% helix, 11% strand | Q3J7C1 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 295 | 0.73 | 0.86 | 51 | empty |
| 2 | 424 | 0.73 | 0.83 | 49 | empty |
| 3 | 147 | 0.68 | 0.89 | 32 | empty |
| 4 | 166 | 0.45 | 0.75 | 22 | empty |
| 5 | 69 | 0.45 | 0.82 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3J7C1
- Elsewhere: UniProt Q3J7C1 · AlphaFold DB Q3J7C1
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