Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A9M0A4)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A9M0A4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A9M0A4
- Type
- protein
- Length
- 633 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x00441461d82e7A5044F490FDBF5573Ac7C62b4d8
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- A9M0A4
- Pockets
- 8 · best druggability 0.75
Structure
1 distinct chain · 46% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 633 | 46% helix, 11% strand | A9M0A4 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 334 | 0.75 | 0.86 | 52 | empty |
| 2 | 380 | 0.73 | 0.84 | 44 | empty |
| 3 | 66 | 0.69 | 0.95 | 20 | empty |
| 4 | 95 | 0.44 | 0.78 | 16 | empty |
| 5 | 64 | 0.40 | 0.80 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9M0A4
- Elsewhere: UniProt A9M0A4 · AlphaFold DB A9M0A4
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