Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B2HQM5)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B2HQM5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B2HQM5
- Type
- protein
- Length
- 546 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5BeA89782341f98147F2D811B063F91F0aE7D7bF
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- B2HQM5
- Pockets
- 4 · best druggability 0.76
Structure
1 distinct chain · 49% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 546 | 49% helix, 12% strand | B2HQM5 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 367 | 0.76 | 0.86 | 37 | empty |
| 2 | 371 | 0.71 | 0.83 | 42 | empty |
| 3 | 124 | 0.54 | 0.82 | 24 | empty |
| 4 | 134 | 0.39 | 0.73 | 24 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2HQM5
- Elsewhere: UniProt B2HQM5 · AlphaFold DB B2HQM5
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