Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B1Y5I3)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B1Y5I3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B1Y5I3
- Type
- protein
- Length
- 628 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- B1Y5I3
- Pockets
- 5 · best druggability 0.81
Structure
1 distinct chain · 49% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 628 | 49% helix, 10% strand | B1Y5I3 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 449 | 0.81 | 0.89 | 54 | empty |
| 2 | 435 | 0.72 | 0.82 | 49 | empty |
| 3 | 56 | 0.50 | 0.87 | 17 | empty |
| 4 | 70 | 0.39 | 0.78 | 17 | empty |
| 5 | 74 | 0.33 | 0.75 | 18 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1Y5I3
- Elsewhere: UniProt B1Y5I3 · AlphaFold DB B1Y5I3
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