Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B1I672)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B1I672) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B1I672
- Type
- protein
- Length
- 432 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf4ED13986579E8e227b3ED6c02276c648754EC27
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- B1I672
- Pockets
- 3 · best druggability 0.72
Structure
1 distinct chain · 54% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 432 | 54% helix, 9% strand | B1I672 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 358 | 0.72 | 0.84 | 43 | empty |
| 2 | 296 | 0.51 | 0.74 | 40 | empty |
| 3 | 173 | 0.46 | 0.76 | 26 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1I672
- Elsewhere: UniProt B1I672 · AlphaFold DB B1I672
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