Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B6J5W3)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B6J5W3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B6J5W3
- Type
- protein
- Length
- 554 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5881B09f2D8e743400698633641fc1cD2Ed2BE6F
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- B6J5W3
- Pockets
- 7 · best druggability 0.78
Structure
1 distinct chain · 48% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 554 | 48% helix, 11% strand | B6J5W3 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 235 | 0.78 | 0.91 | 36 | empty |
| 2 | 437 | 0.72 | 0.83 | 50 | empty |
| 3 | 291 | 0.56 | 0.76 | 33 | empty |
| 4 | 78 | 0.44 | 0.80 | 12 | empty |
| 5 | 136 | 0.40 | 0.74 | 26 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6J5W3
- Elsewhere: UniProt B6J5W3 · AlphaFold DB B6J5W3
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