Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A4QDR7)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A4QDR7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A4QDR7
- Type
- protein
- Length
- 587 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4a9773C41eA9195713EAB3716E91205C515501aD
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- A4QDR7
- Pockets
- 7 · best druggability 0.78
Structure
1 distinct chain · 45% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 587 | 45% helix, 11% strand | A4QDR7 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 261 | 0.78 | 0.90 | 39 | empty |
| 2 | 422 | 0.72 | 0.83 | 50 | empty |
| 3 | 87 | 0.52 | 0.84 | 24 | empty |
| 4 | 163 | 0.43 | 0.74 | 20 | empty |
| 5 | 173 | 0.42 | 0.73 | 31 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4QDR7
- Elsewhere: UniProt A4QDR7 · AlphaFold DB A4QDR7
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