Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (P61424)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (P61424) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P61424
- Type
- protein
- Length
- 599 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- P61424
- Pockets
- 7 · best druggability 0.77
Structure
1 distinct chain · 44% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 599 | 44% helix, 11% strand | P61424 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 268 | 0.77 | 0.90 | 38 | empty |
| 2 | 404 | 0.73 | 0.84 | 47 | empty |
| 3 | 145 | 0.55 | 0.82 | 19 | empty |
| 4 | 88 | 0.45 | 0.80 | 17 | empty |
| 5 | 89 | 0.40 | 0.77 | 22 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61424
- Elsewhere: UniProt P61424 · AlphaFold DB P61424
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