Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B1JYX0)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (B1JYX0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B1JYX0
- Type
- protein
- Length
- 643 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- B1JYX0
- Pockets
- 7 · best druggability 0.74
Structure
1 distinct chain · 48% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 643 | 48% helix, 10% strand | B1JYX0 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 385 | 0.74 | 0.84 | 58 | empty |
| 2 | 371 | 0.72 | 0.84 | 42 | empty |
| 3 | 117 | 0.51 | 0.81 | 19 | empty |
| 4 | 108 | 0.46 | 0.79 | 23 | empty |
| 5 | 103 | 0.39 | 0.76 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1JYX0
- Elsewhere: UniProt B1JYX0 · AlphaFold DB B1JYX0
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