Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A4YZQ6)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A4YZQ6) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A4YZQ6
- Type
- protein
- Length
- 633 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x41f14059A2ce2B9bfD2DFE723f11dad3eCa2614e
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- A4YZQ6
- Pockets
- 7 · best druggability 0.73
Structure
1 distinct chain · 44% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 633 | 44% helix, 10% strand | A4YZQ6 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 383 | 0.73 | 0.84 | 47 | empty |
| 2 | 327 | 0.72 | 0.84 | 59 | empty |
| 3 | 108 | 0.55 | 0.84 | 19 | empty |
| 4 | 84 | 0.49 | 0.82 | 19 | empty |
| 5 | 136 | 0.38 | 0.73 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4YZQ6
- Elsewhere: UniProt A4YZQ6 · AlphaFold DB A4YZQ6
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