Research workbench
AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A9IFG8)
Analyse AlphaFold monomer V2.0 prediction for phosphomethylpyrimidine synthase (A9IFG8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A9IFG8
- Type
- protein
- Length
- 637 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xA98E98d7D7aC99F2d3D548BF567847cac90aca12
- Molecule
- Phosphomethylpyrimidine synthase
- UniProt
- A9IFG8
- Pockets
- 6 · best druggability 0.76
Structure
1 distinct chain · 47% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphomethylpyrimidine synthase | protein | 637 | 47% helix, 10% strand | A9IFG8 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 445 | 0.76 | 0.84 | 63 | empty |
| 2 | 392 | 0.70 | 0.82 | 51 | empty |
| 3 | 178 | 0.68 | 0.87 | 30 | empty |
| 4 | 86 | 0.43 | 0.79 | 13 | empty |
| 5 | 140 | 0.42 | 0.75 | 25 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9IFG8
- Elsewhere: UniProt A9IFG8 · AlphaFold DB A9IFG8
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