Research workbench
AlphaFold monomer V2.0 prediction for tyrosine--tRNA ligase (P0DG63)
Analyse AlphaFold monomer V2.0 prediction for tyrosine--tRNA ligase (P0DG63) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0DG63
- Type
- protein
- Length
- 418 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5d1DBE1CCF2C7b8d1a0c0376A6169d8E6d6f2603
- Molecule
- Tyrosine--tRNA ligase
- UniProt
- P0DG63
- Pockets
- 4 · best druggability 0.76
Structure
1 distinct chain · 50% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine--tRNA ligase | protein | 418 | 50% helix, 15% strand | P0DG63 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 372 | 0.76 | 0.86 | 50 | empty |
| 2 | 196 | 0.43 | 0.73 | 32 | empty |
| 3 | 121 | 0.41 | 0.75 | 21 | empty |
| 4 | 84 | 0.39 | 0.77 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DG63
- Elsewhere: UniProt P0DG63 · AlphaFold DB P0DG63
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