Research workbench
AlphaFold monomer V2.0 prediction for valine--tRNA ligase (Q8PGQ7)
Analyse AlphaFold monomer V2.0 prediction for valine--tRNA ligase (Q8PGQ7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8PGQ7
- Type
- protein
- Length
- 944 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xec36345797D5f8570EE6344bD8f385a362719E9C
- Molecule
- Valine--tRNA ligase
- UniProt
- Q8PGQ7
- Pockets
- 6 · best druggability 0.78
Structure
1 distinct chain · 49% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Valine--tRNA ligase | protein | 944 | 49% helix, 19% strand | Q8PGQ7 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1035 | 0.78 | 0.80 | 76 | empty |
| 2 | 658 | 0.74 | 0.80 | 65 | empty |
| 3 | 54 | 0.41 | 0.81 | 14 | empty |
| 4 | 101 | 0.39 | 0.76 | 16 | empty |
| 5 | 91 | 0.39 | 0.76 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PGQ7
- Elsewhere: UniProt Q8PGQ7 · AlphaFold DB Q8PGQ7
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