Research workbench
AlphaFold monomer V2.0 prediction for valine--tRNA ligase (Q8P040)
Analyse AlphaFold monomer V2.0 prediction for valine--tRNA ligase (Q8P040) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8P040
- Type
- protein
- Length
- 882 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBeF036C04BE8b62aF43C82A9ec62223aAa892154
- Molecule
- Valine--tRNA ligase
- UniProt
- Q8P040
- Pockets
- 8 · best druggability 0.73
Structure
1 distinct chain · 49% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Valine--tRNA ligase | protein | 882 | 49% helix, 18% strand | Q8P040 |
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 706 | 0.73 | 0.79 | 47 | empty |
| 2 | 564 | 0.69 | 0.78 | 62 | empty |
| 3 | 109 | 0.39 | 0.75 | 17 | empty |
| 4 | 90 | 0.38 | 0.76 | 23 | empty |
| 5 | 72 | 0.34 | 0.76 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8P040
- Elsewhere: UniProt Q8P040 · AlphaFold DB Q8P040
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