Research workbench
AlphaFold monomer V2.0 prediction for valine--tRNA ligase (Q9CMK5)
Analyse AlphaFold monomer V2.0 prediction for valine--tRNA ligase (Q9CMK5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9CMK5
- Type
- protein
- Length
- 954 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC0f5cbbADD874269E5C27dE8258432D46a904ac7
- Molecule
- Valine--tRNA ligase
- UniProt
- Q9CMK5
- Pockets
- 10 · best druggability 0.80
Structure
1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Valine--tRNA ligase | protein | 954 | 47% helix, 19% strand | Q9CMK5 |
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1137 | 0.80 | 0.81 | 81 | empty |
| 2 | 408 | 0.65 | 0.79 | 42 | empty |
| 3 | 235 | 0.63 | 0.82 | 27 | empty |
| 4 | 287 | 0.55 | 0.76 | 37 | empty |
| 5 | 127 | 0.42 | 0.75 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9CMK5
- Elsewhere: UniProt Q9CMK5 · AlphaFold DB Q9CMK5
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