Research workbench
AlphaFold monomer V2.0 prediction for serine--tRNA ligase (Q04GM3)
Analyse AlphaFold monomer V2.0 prediction for serine--tRNA ligase (Q04GM3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q04GM3
- Type
- protein
- Length
- 439 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdED03e95F08d927Dab208C6936D4158E4a542f89
- Molecule
- Serine--tRNA ligase
- UniProt
- Q04GM3
- Pockets
- 5 · best druggability 0.71
Structure
1 distinct chain · 44% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine--tRNA ligase | protein | 439 | 44% helix, 20% strand | Q04GM3 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 590 | 0.71 | 0.80 | 54 | empty |
| 2 | 60 | 0.36 | 0.79 | 16 | empty |
| 3 | 55 | 0.35 | 0.79 | 12 | empty |
| 4 | 50 | 0.28 | 0.75 | 17 | empty |
| 5 | 60 | 0.28 | 0.73 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04GM3
- Elsewhere: UniProt Q04GM3 · AlphaFold DB Q04GM3
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