Research workbench
AlphaFold monomer V2.0 prediction for serine--tRNA ligase (B1YGC4)
Analyse AlphaFold monomer V2.0 prediction for serine--tRNA ligase (B1YGC4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B1YGC4
- Type
- protein
- Length
- 425 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x78Cc7f9BF18AF8279e492D45EE7Fe9d7cC6f6D07
- Molecule
- Serine--tRNA ligase
- UniProt
- B1YGC4
- Pockets
- 5 · best druggability 0.74
Structure
1 distinct chain · 44% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine--tRNA ligase | protein | 425 | 44% helix, 20% strand | B1YGC4 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 646 | 0.74 | 0.81 | 52 | empty |
| 2 | 61 | 0.41 | 0.81 | 15 | empty |
| 3 | 71 | 0.34 | 0.76 | 18 | empty |
| 4 | 56 | 0.30 | 0.75 | 22 | empty |
| 5 | 67 | 0.30 | 0.74 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1YGC4
- Elsewhere: UniProt B1YGC4 · AlphaFold DB B1YGC4
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