Research workbench
AlphaFold monomer V2.0 prediction for arginine--tRNA ligase (Q8SRD8)
Analyse AlphaFold monomer V2.0 prediction for arginine--tRNA ligase (Q8SRD8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8SRD8
- Type
- protein
- Length
- 563 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0EA189b2343A464f560b44103f6A3396Da1dA8a9
- Molecule
- Arginine--tRNA ligase
- UniProt
- Q8SRD8
- Pockets
- 5 · best druggability 0.57
Structure
1 distinct chain · 59% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arginine--tRNA ligase | protein | 563 | 59% helix, 12% strand | Q8SRD8 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.57 | 0.86 | 19 | empty |
| 2 | 256 | 0.55 | 0.77 | 39 | empty |
| 3 | 101 | 0.36 | 0.74 | 20 | empty |
| 4 | 50 | 0.33 | 0.78 | 13 | empty |
| 5 | 68 | 0.33 | 0.75 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8SRD8
- Elsewhere: UniProt Q8SRD8 · AlphaFold DB Q8SRD8
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