Research workbench
AlphaFold monomer V2.0 prediction for proline--tRNA ligase (B9DTD1)
Analyse AlphaFold monomer V2.0 prediction for proline--tRNA ligase (B9DTD1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B9DTD1
- Type
- protein
- Length
- 618 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x629e2743E9cB912e911eF9394Ab0f16Acc3A5f5c
- Molecule
- Proline--tRNA ligase
- UniProt
- B9DTD1
- Pockets
- 5 · best druggability 0.68
Structure
1 distinct chain · 31% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proline--tRNA ligase | protein | 618 | 31% helix, 31% strand | B9DTD1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 493 | 0.68 | 0.79 | 54 | empty |
| 2 | 122 | 0.49 | 0.79 | 25 | empty |
| 3 | 143 | 0.44 | 0.76 | 22 | empty |
| 4 | 111 | 0.38 | 0.75 | 17 | empty |
| 5 | 52 | 0.23 | 0.72 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9DTD1
- Elsewhere: UniProt B9DTD1 · AlphaFold DB B9DTD1
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