Research workbench
AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q6MDG0)
Analyse AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q6MDG0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6MDG0
- Type
- protein
- Length
- 698 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf4ED13986579E8e227b3ED6c02276c648754EC27
- Molecule
- Methionine--tRNA ligase
- UniProt
- Q6MDG0
- Pockets
- 5 · best druggability 0.65
Structure
1 distinct chain · 44% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine--tRNA ligase | protein | 698 | 44% helix, 19% strand | Q6MDG0 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 355 | 0.65 | 0.79 | 40 | empty |
| 2 | 308 | 0.57 | 0.76 | 34 | empty |
| 3 | 78 | 0.40 | 0.78 | 23 | empty |
| 4 | 70 | 0.32 | 0.74 | 14 | empty |
| 5 | 54 | 0.31 | 0.76 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6MDG0
- Elsewhere: UniProt Q6MDG0 · AlphaFold DB Q6MDG0
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