Research workbench
AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q5V1B3)
Analyse AlphaFold monomer V2.0 prediction for methionine--tRNA ligase (Q5V1B3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5V1B3
- Type
- protein
- Length
- 717 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- Methionine--tRNA ligase
- UniProt
- Q5V1B3
- Pockets
- 5 · best druggability 0.81
Structure
1 distinct chain · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine--tRNA ligase | protein | 717 | 43% helix, 19% strand | Q5V1B3 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1098 | 0.81 | 0.82 | 103 | empty |
| 2 | 134 | 0.57 | 0.84 | 24 | empty |
| 3 | 279 | 0.57 | 0.78 | 26 | empty |
| 4 | 97 | 0.39 | 0.76 | 17 | empty |
| 5 | 52 | 0.27 | 0.74 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5V1B3
- Elsewhere: UniProt Q5V1B3 · AlphaFold DB Q5V1B3
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