Research workbench
AlphaFold monomer V2.0 prediction for leucine--tRNA ligase (A3DKS1)
Analyse AlphaFold monomer V2.0 prediction for leucine--tRNA ligase (A3DKS1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A3DKS1
- Type
- protein
- Length
- 969 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC5423C95BD2c5b7EB8e3A2f399D357489A01C1e7
- Molecule
- Leucine--tRNA ligase
- UniProt
- A3DKS1
- Pockets
- 8 · best druggability 0.79
Structure
1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Leucine--tRNA ligase | protein | 969 | 51% helix, 17% strand | A3DKS1 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1099 | 0.79 | 0.81 | 91 | empty |
| 2 | 392 | 0.66 | 0.79 | 37 | empty |
| 3 | 67 | 0.51 | 0.85 | 14 | empty |
| 4 | 176 | 0.48 | 0.76 | 27 | empty |
| 5 | 74 | 0.43 | 0.80 | 13 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3DKS1
- Elsewhere: UniProt A3DKS1 · AlphaFold DB A3DKS1
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