Research workbench
AlphaFold monomer V2.0 prediction for leucine--tRNA ligase (C1DMV9)
Analyse AlphaFold monomer V2.0 prediction for leucine--tRNA ligase (C1DMV9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- C1DMV9
- Type
- protein
- Length
- 870 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
- Molecule
- Leucine--tRNA ligase
- UniProt
- C1DMV9
- Pockets
- 6 · best druggability 0.82
Structure
1 distinct chain · 41% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Leucine--tRNA ligase | protein | 870 | 41% helix, 23% strand | C1DMV9 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1175 | 0.82 | 0.83 | 122 | empty |
| 2 | 57 | 0.49 | 0.86 | 15 | empty |
| 3 | 84 | 0.36 | 0.76 | 20 | empty |
| 4 | 94 | 0.35 | 0.74 | 23 | empty |
| 5 | 91 | 0.33 | 0.73 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1DMV9
- Elsewhere: UniProt C1DMV9 · AlphaFold DB C1DMV9
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