Research workbench
AlphaFold monomer V2.0 prediction for lysine--tRNA ligase (Q5X4D5)
Analyse AlphaFold monomer V2.0 prediction for lysine--tRNA ligase (Q5X4D5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5X4D5
- Type
- protein
- Length
- 496 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xCe4913b38f6cdd39cE5A2503280B7fe0683920B8
- Molecule
- Lysine--tRNA ligase
- UniProt
- Q5X4D5
- Pockets
- 5 · best druggability 0.74
Structure
1 distinct chain · 37% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysine--tRNA ligase | protein | 496 | 37% helix, 25% strand | Q5X4D5 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 561 | 0.74 | 0.82 | 61 | empty |
| 2 | 270 | 0.53 | 0.76 | 27 | empty |
| 3 | 80 | 0.33 | 0.74 | 15 | empty |
| 4 | 53 | 0.33 | 0.78 | 14 | empty |
| 5 | 66 | 0.27 | 0.72 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5X4D5
- Elsewhere: UniProt Q5X4D5 · AlphaFold DB Q5X4D5
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