Research workbench
AlphaFold monomer V2.0 prediction for lysine--tRNA ligase (Q9RHV9)
Analyse AlphaFold monomer V2.0 prediction for lysine--tRNA ligase (Q9RHV9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9RHV9
- Type
- protein
- Length
- 494 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- Lysine--tRNA ligase
- UniProt
- Q9RHV9
- Pockets
- 4 · best druggability 0.74
Structure
1 distinct chain · 37% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysine--tRNA ligase | protein | 494 | 37% helix, 25% strand | Q9RHV9 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 633 | 0.74 | 0.81 | 66 | empty |
| 2 | 105 | 0.35 | 0.73 | 22 | empty |
| 3 | 67 | 0.29 | 0.73 | 19 | empty |
| 4 | 67 | 0.27 | 0.72 | 11 | empty |
Compared structures
- 3E9H · Lysyl-tRNA synthetase from bacillus stearothermophilus complexed with L-lysylsulfamoyl… · an experimental structure of the same protein · chain A against D, TM-score 0.97
- 3E9H · Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with L-Lysylsulfamoyl… · an experimental structure of the same protein · chain A against D, TM-score 0.97
- 3A74 · Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with Diadenosine… · an experimental structure of the same protein · chain A against D, TM-score 0.97
- 3A74 · Lysyl-tRNA synthetase from bacillus stearothermophilus complexed with diadenosine… · an experimental structure of the same protein · chain A against D, TM-score 0.97
- 3E9I · Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with L-Lysine… · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 3E9I · Lysyl-tRNA synthetase from bacillus stearothermophilus complexed with L-lysine… · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RHV9
- Elsewhere: UniProt Q9RHV9 · AlphaFold DB Q9RHV9
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