Research workbench
AlphaFold monomer V2.0 prediction for lysine--tRNA ligase (A1K5J9)
Analyse AlphaFold monomer V2.0 prediction for lysine--tRNA ligase (A1K5J9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A1K5J9
- Type
- protein
- Length
- 500 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3Abe1980007F3787fAfC5f8C1F4951B45508443D
- Molecule
- Lysine--tRNA ligase
- UniProt
- A1K5J9
- Pockets
- 6 · best druggability 0.73
Structure
1 distinct chain · 38% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysine--tRNA ligase | protein | 500 | 38% helix, 26% strand | A1K5J9 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 620 | 0.73 | 0.80 | 71 | empty |
| 2 | 129 | 0.45 | 0.77 | 17 | empty |
| 3 | 68 | 0.34 | 0.76 | 16 | empty |
| 4 | 67 | 0.31 | 0.75 | 16 | empty |
| 5 | 81 | 0.29 | 0.72 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1K5J9
- Elsewhere: UniProt A1K5J9 · AlphaFold DB A1K5J9
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