Research workbench
AlphaFold monomer V2.0 prediction for glycine--tRNA ligase beta subunit (P0DG39)
Analyse AlphaFold monomer V2.0 prediction for glycine--tRNA ligase beta subunit (P0DG39) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0DG39
- Type
- protein
- Length
- 679 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x13E88C248c9e8FD361F590BE0a618ae231254269
- Molecule
- Glycine--tRNA ligase beta subunit
- UniProt
- P0DG39
- Pockets
- 2 · best druggability 0.54
Structure
1 distinct chain · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycine--tRNA ligase beta subunit | protein | 679 | 51% helix, 16% strand | P0DG39 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.54 | 0.76 | 26 | empty |
| 2 | 129 | 0.38 | 0.74 | 22 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DG39
- Elsewhere: UniProt P0DG39 · AlphaFold DB P0DG39
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