Research workbench
AlphaFold monomer V2.0 prediction for glycine--tRNA ligase beta subunit (Q04JM8)
Analyse AlphaFold monomer V2.0 prediction for glycine--tRNA ligase beta subunit (Q04JM8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q04JM8
- Type
- protein
- Length
- 678 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5f73CC96Faa6274C5e342558A18Dd99ed49F39A9
- Molecule
- Glycine--tRNA ligase beta subunit
- UniProt
- Q04JM8
- Pockets
- 3 · best druggability 0.55
Structure
1 distinct chain · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycine--tRNA ligase beta subunit | protein | 678 | 51% helix, 16% strand | Q04JM8 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.55 | 0.77 | 21 | empty |
| 2 | 118 | 0.37 | 0.74 | 21 | empty |
| 3 | 104 | 0.36 | 0.74 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04JM8
- Elsewhere: UniProt Q04JM8 · AlphaFold DB Q04JM8
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