Research workbench
AlphaFold monomer V2.0 prediction for glycine--tRNA ligase alpha subunit (A1VZ59)
Analyse AlphaFold monomer V2.0 prediction for glycine--tRNA ligase alpha subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A1VZ59
- Type
- protein
- Length
- 287 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- Glycine--tRNA ligase alpha subunit
- UniProt
- A1VZ59
- Pockets
- 2 · best druggability 0.66
Structure
1 distinct chain · 46% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycine--tRNA ligase alpha subunit | protein | 287 | 46% helix, 24% strand | A1VZ59 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 387 | 0.66 | 0.80 | 51 | empty |
| 2 | 89 | 0.47 | 0.81 | 21 | empty |
Compared structures
- 3RF1 · The crystal structure of glycyl-tRNA synthetase subunit alpha from campylobacter jejuni… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 3RF1 · The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni… · an experimental structure of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1VZ59
- Elsewhere: UniProt A1VZ59 · AlphaFold DB A1VZ59
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