Research workbench
AlphaFold monomer V2.0 prediction for phenylalanine--tRNA ligase beta subunit (Q8D3B5)
Analyse AlphaFold monomer V2.0 prediction for phenylalanine--tRNA ligase beta subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8D3B5
- Type
- protein
- Length
- 803 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x78Cc7f9BF18AF8279e492D45EE7Fe9d7cC6f6D07
- Molecule
- Phenylalanine--tRNA ligase beta subunit
- UniProt
- Q8D3B5
- Pockets
- 7 · best druggability 0.60
Structure
1 distinct chain · 27% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phenylalanine--tRNA ligase beta subunit | protein | 803 | 27% helix, 30% strand | Q8D3B5 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 267 | 0.60 | 0.79 | 22 | empty |
| 2 | 197 | 0.57 | 0.80 | 48 | empty |
| 3 | 283 | 0.51 | 0.73 | 28 | empty |
| 4 | 154 | 0.48 | 0.77 | 22 | empty |
| 5 | 152 | 0.46 | 0.76 | 23 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8D3B5
- Elsewhere: UniProt Q8D3B5 · AlphaFold DB Q8D3B5
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