Research workbench
AlphaFold monomer V2.0 prediction for syncytin-1 (P61564)
Analyse AlphaFold monomer V2.0 prediction for syncytin-1 (P61564) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P61564
- Type
- protein
- Length
- 538 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF8cD1d8d93E9783063700De244A6e3cf6A195579
- Molecule
- Syncytin-1
- UniProt
- P61564
- Pockets
- 7 · best druggability 0.78
Structure
1 distinct chain · 35% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Syncytin-1 | protein | 538 | 35% helix, 15% strand | P61564 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 742 | 0.78 | 0.82 | 50 | empty |
| 2 | 937 | 0.70 | 0.74 | 76 | empty |
| 3 | 486 | 0.62 | 0.76 | 57 | empty |
| 4 | 138 | 0.43 | 0.76 | 22 | empty |
| 5 | 61 | 0.34 | 0.77 | 14 | empty |
Modifications
Observed in the structure: 8 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61564
- Elsewhere: UniProt P61564 · AlphaFold DB P61564
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