Research workbench
AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (Q8D2W8)
Analyse AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (Q8D2W8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8D2W8
- Type
- protein
- Length
- 873 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x78Cc7f9BF18AF8279e492D45EE7Fe9d7cC6f6D07
- Molecule
- Alanine--tRNA ligase
- UniProt
- Q8D2W8
- Pockets
- 7 · best druggability 0.69
Structure
1 distinct chain · 40% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanine--tRNA ligase | protein | 873 | 40% helix, 27% strand | Q8D2W8 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 419 | 0.69 | 0.81 | 45 | empty |
| 2 | 351 | 0.61 | 0.77 | 35 | empty |
| 3 | 401 | 0.55 | 0.73 | 41 | empty |
| 4 | 182 | 0.50 | 0.77 | 34 | empty |
| 5 | 151 | 0.48 | 0.78 | 22 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8D2W8
- Elsewhere: UniProt Q8D2W8 · AlphaFold DB Q8D2W8
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