Research workbench
AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (A3DNI3)
Analyse AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (A3DNI3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A3DNI3
- Type
- protein
- Length
- 909 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7a1388B6Aad67B04634A32f63b8A6D6005eab86c
- Molecule
- Alanine--tRNA ligase
- UniProt
- A3DNI3
- Pockets
- 7 · best druggability 0.71
Structure
1 distinct chain · 44% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanine--tRNA ligase | protein | 909 | 44% helix, 23% strand | A3DNI3 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 804 | 0.71 | 0.77 | 78 | empty |
| 2 | 304 | 0.65 | 0.81 | 36 | empty |
| 3 | 239 | 0.59 | 0.80 | 24 | empty |
| 4 | 301 | 0.56 | 0.76 | 30 | empty |
| 5 | 214 | 0.52 | 0.77 | 36 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3DNI3
- Elsewhere: UniProt A3DNI3 · AlphaFold DB A3DNI3
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