Research workbench
AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (Q1MP42)
Analyse AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (Q1MP42) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q1MP42
- Type
- protein
- Length
- 884 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x307A6Ce129d8ef5a8C187bb08EE91A7d273CD033
- Molecule
- Alanine--tRNA ligase
- UniProt
- Q1MP42
- Pockets
- 10 · best druggability 0.73
Structure
1 distinct chain · 43% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanine--tRNA ligase | protein | 884 | 43% helix, 27% strand | Q1MP42 |
Pockets
10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 514 | 0.73 | 0.82 | 47 | empty |
| 2 | 650 | 0.66 | 0.76 | 67 | empty |
| 3 | 232 | 0.52 | 0.76 | 36 | empty |
| 4 | 102 | 0.46 | 0.79 | 21 | empty |
| 5 | 109 | 0.40 | 0.76 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1MP42
- Elsewhere: UniProt Q1MP42 · AlphaFold DB Q1MP42
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