Research workbench
AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (Q9Y9X3)
Analyse AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (Q9Y9X3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9Y9X3
- Type
- protein
- Length
- 900 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa275367010E4cf621562A79b70DfF95f747bf221
- Molecule
- Alanine--tRNA ligase
- UniProt
- Q9Y9X3
- Pockets
- 8 · best druggability 0.75
Structure
1 distinct chain · 43% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanine--tRNA ligase | protein | 900 | 43% helix, 25% strand | Q9Y9X3 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 484 | 0.75 | 0.84 | 61 | empty |
| 2 | 447 | 0.69 | 0.80 | 60 | empty |
| 3 | 337 | 0.64 | 0.80 | 35 | empty |
| 4 | 338 | 0.59 | 0.77 | 42 | empty |
| 5 | 108 | 0.39 | 0.75 | 23 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y9X3
- Elsewhere: UniProt Q9Y9X3 · AlphaFold DB Q9Y9X3
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