Research workbench
AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (A0KPG1)
Analyse AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (A0KPG1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0KPG1
- Type
- protein
- Length
- 874 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xe98bf0c02d2A46E3299A9930210B6C72162719bF
- Molecule
- Alanine--tRNA ligase
- UniProt
- A0KPG1
- Pockets
- 9 · best druggability 0.72
Structure
1 distinct chain · 41% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanine--tRNA ligase | protein | 874 | 41% helix, 26% strand | A0KPG1 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 545 | 0.72 | 0.81 | 54 | empty |
| 2 | 798 | 0.70 | 0.76 | 85 | empty |
| 3 | 179 | 0.55 | 0.80 | 27 | empty |
| 4 | 70 | 0.41 | 0.80 | 16 | empty |
| 5 | 72 | 0.40 | 0.80 | 22 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0KPG1
- Elsewhere: UniProt A0KPG1 · AlphaFold DB A0KPG1
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