Research workbench
AlphaFold monomer V2.0 prediction for alanine--tRNA ligase, cytoplasmic (O01541)
Analyse AlphaFold monomer V2.0 prediction for alanine--tRNA ligase, cytoplasmic (O01541) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O01541
- Type
- protein
- Length
- 968 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8EFd901A9417Db3E794c277E751d8219022562Ec
- Molecule
- Alanine--tRNA ligase, cytoplasmic
- UniProt
- O01541
- Pockets
- 9 · best druggability 0.71
Structure
1 distinct chain · 44% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanine--tRNA ligase, cytoplasmic | protein | 968 | 44% helix, 23% strand | O01541 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1167 | 0.71 | 0.75 | 96 | empty |
| 2 | 372 | 0.69 | 0.82 | 44 | empty |
| 3 | 248 | 0.57 | 0.78 | 35 | empty |
| 4 | 165 | 0.50 | 0.78 | 25 | empty |
| 5 | 138 | 0.42 | 0.76 | 24 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O01541
- Elsewhere: UniProt O01541 · AlphaFold DB O01541
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