Research workbench

AlphaFold monomer V2.0 prediction for probable starch synthase 4, CHLOROPLASTIC/AMYLOPLASTIC (Q0WVX5)

Analyse AlphaFold monomer V2.0 prediction for probable starch synthase 4… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q0WVX5
Type: protein
Length: 1,040 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x9188600a0FCa2914254C94299b1bd9721Bc4D500
Molecule: Probable starch synthase 4, CHLOROPLASTIC/AMYLOPLASTIC
UniProt: Q0WVX5
Pockets: 6 · best druggability 0.80

Structure

1 distinct chain · 49% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable starch synthase 4, CHLOROPLASTIC/AMYLOPLASTIC	protein	1040	49% helix, 10% strand	Q0WVX5

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	746	0.80	0.83	61	empty
2	666	0.66	0.75	55	empty
3	65	0.52	0.86	16	empty
4	102	0.39	0.76	19	empty
5	50	0.30	0.76	14	empty

Compared structures

6GNE · Catalytic domain of Starch Synthase IV from Arabidopsis thaliana bound to ADP and acarbose · an experimental structure of the same protein · chain A against B, TM-score 0.47
6GNE · Catalytic domain of starch synthase IV from arabidopsis thaliana bound to ADP and acarbose · an experimental structure of the same protein · chain A against B, TM-score 0.47

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0WVX5
Elsewhere: UniProt Q0WVX5 · AlphaFold DB Q0WVX5

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