Research workbench
AlphaFold monomer V2.0 prediction for protein substandard starch grain 4, chloroplastic (W0RYD3)
Analyse AlphaFold monomer V2.0 prediction for protein substandard starch grain 4… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- W0RYD3
- Type
- protein
- Length
- 2,135 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd9E63dcE84b18c2c82d6102A25eE05c6718097CA
- Molecule
- Protein substandard starch grain 4, chloroplastic
- UniProt
- W0RYD3
- Pockets
- 18 · best druggability 0.89
Structure
1 distinct chain · 14% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein substandard starch grain 4, chloroplastic | protein | 2135 | 14% helix, 39% strand | W0RYD3 |
Pockets
18 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1010 | 0.89 | 0.89 | 102 | empty |
| 2 | 316 | 0.80 | 0.90 | 48 | empty |
| 3 | 910 | 0.76 | 0.78 | 76 | empty |
| 4 | 592 | 0.74 | 0.80 | 48 | empty |
| 5 | 103 | 0.62 | 0.87 | 23 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W0RYD3
- Elsewhere: UniProt W0RYD3 · AlphaFold DB W0RYD3
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