Research workbench
AlphaFold monomer V2.0 prediction for virulence protein SSD1 (Q5AK62)
Analyse AlphaFold monomer V2.0 prediction for virulence protein SSD1 (Q5AK62) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5AK62
- Type
- protein
- Length
- 1,274 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7FDF8b382C6a36A8772D1A265E8e480c7DF0A9C1
- Molecule
- Virulence protein SSD1
- UniProt
- Q5AK62
- Pockets
- 17 · best druggability 0.86
Structure
1 distinct chain · 27% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Virulence protein SSD1 | protein | 1274 | 27% helix, 16% strand | Q5AK62 |
Pockets
17 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 724 | 0.86 | 0.89 | 99 | empty |
| 2 | 730 | 0.80 | 0.84 | 83 | empty |
| 3 | 137 | 0.77 | 0.95 | 32 | empty |
| 4 | 117 | 0.76 | 0.95 | 31 | empty |
| 5 | 55 | 0.71 | 0.98 | 18 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5AK62
- Elsewhere: UniProt Q5AK62 · AlphaFold DB Q5AK62
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