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AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein (O29633)

Analyse AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: O29633
Type: protein
Length: 433 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x35612D34a32C306CA4fc1edA9360D1F717e25950
Molecule: Signal recognition particle 54 kda protein
UniProt: O29633
Pockets: 6 · best druggability 0.71

Structure

1 distinct chain · 58% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Signal recognition particle 54 kda protein	protein	433	58% helix, 10% strand	O29633

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	420	0.71	0.82	42	empty
2	77	0.71	0.95	21	empty
3	530	0.63	0.75	47	empty
4	145	0.39	0.73	23	empty
5	68	0.33	0.76	15	empty

Compared structures

2JQE · Soution Structure of Af54 M-domain · an experimental structure of the same protein · chain A against A, TM-score 0.17
2JQE · Soution structure of AF54 M-domain · an experimental structure of the same protein · chain A against A, TM-score 0.17

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O29633
Elsewhere: UniProt O29633 · AlphaFold DB O29633

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