Research workbench

AlphaFold monomer V2.0 prediction for streptopain (P0C0J1)

Analyse AlphaFold monomer V2.0 prediction for streptopain (P0C0J1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P0C0J1
Type: protein
Length: 398 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xDa30399E955a842042B4DfB2a86B9Aff5E5aB0e8
Molecule: Streptopain
UniProt: P0C0J1
Pockets: 4 · best druggability 0.48

Structure

1 distinct chain · 29% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Streptopain	protein	398	29% helix, 18% strand	P0C0J1

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.48	0.80	24	empty
2	120	0.44	0.78	33	empty
3	120	0.41	0.76	25	empty
4	82	0.32	0.74	19	empty

Compared structures

2JTC · 3D structure and backbone dynamics of SPE B · an experimental structure of the same protein · chain A against A, TM-score 0.58
2JTC · 3D structure and backbone dynamics of spe B · an experimental structure of the same protein · chain A against A, TM-score 0.58

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0C0J1
Elsewhere: UniProt P0C0J1 · AlphaFold DB P0C0J1

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