Research workbench
AlphaFold monomer V2.0 prediction for surface presentation of antigens protein spap (P0A1L3)
Analyse AlphaFold monomer V2.0 prediction for surface presentation of antigens protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0A1L3
- Type
- protein
- Length
- 216 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9e5E98E011361C5888c92e2CDb7652E02Bd5C7Ed
- Molecule
- Surface presentation of antigens protein spap
- UniProt
- P0A1L3
- Pockets
- 3 · best druggability 0.59
Structure
1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Surface presentation of antigens protein spap | protein | 216 | 76% helix, 0% strand | P0A1L3 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 378 | 0.59 | 0.75 | 30 | empty |
| 2 | 79 | 0.36 | 0.76 | 16 | empty |
| 3 | 50 | 0.30 | 0.76 | 15 | empty |
Compared structures
- 6RWY · Export apparatus core and inner rod of the shigella type 3 secretion system · an experimental structure of the same protein · chain A against a, TM-score 0.82
- 6RWY · Export apparatus core and inner rod of the Shigella type 3 secretion system · an experimental structure of the same protein · chain A against a, TM-score 0.82
- 8AXK · Type 3 secretion system export apparatus core, inner rod and needle of Shigella flexneri · an experimental structure of the same protein · chain A against C, TM-score 0.82
- 6R6B · Structure of the core shigella flexneri type III secretion system export gate complex… · an experimental structure of the same protein · chain A against A, TM-score 0.80
- 6R6B · Structure of the core Shigella flexneri type III secretion system export gate complex… · an experimental structure of the same protein · chain A against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A1L3
- Elsewhere: UniProt P0A1L3 · AlphaFold DB P0A1L3
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