Research workbench
AlphaFold monomer V2.0 prediction for spermatogenesis-associated protein 5-like protein 1 (Q9BVQ7)
Analyse AlphaFold monomer V2.0 prediction for spermatogenesis-associated protein 5-like… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9BVQ7
- Type
- protein
- Length
- 753 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x46EfCa788d03A3e879DAcDb96552AB8Bbc7e20b3
- Molecule
- Spermatogenesis-associated protein 5-like protein 1
- UniProt
- Q9BVQ7
- Pockets
- 8 · best druggability 0.78
Structure
1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spermatogenesis-associated protein 5-like protein 1 | protein | 753 | 41% helix, 17% strand | Q9BVQ7 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 991 | 0.78 | 0.80 | 88 | empty |
| 2 | 125 | 0.57 | 0.84 | 24 | empty |
| 3 | 283 | 0.54 | 0.75 | 33 | empty |
| 4 | 221 | 0.54 | 0.77 | 29 | empty |
| 5 | 201 | 0.53 | 0.78 | 38 | empty |
Compared structures
- 8RHN · Structure of the 55LCC ATPase complex · an experimental structure of the same protein · chain A against O, TM-score 0.52
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BVQ7
- Elsewhere: UniProt Q9BVQ7 · AlphaFold DB Q9BVQ7
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